Performance of DNA data embedding algorithms under substitution mutations

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dc.contributor.author Haughton, David
dc.contributor.author Balado, Félix
dc.date.accessioned 2011-01-17T12:57:51Z
dc.date.available 2011-01-17T12:57:51Z
dc.date.copyright 2010 IEEE en
dc.date.issued 2010-12
dc.identifier.uri http://hdl.handle.net/10197/2727
dc.description IEEE International Conference on Bioinformatics and Biomedicine (BIBM2010), 18-21 December, 2010, Hong Kong en
dc.description.abstract DNA data embedding is a relatively recent area which aims at embedding arbitrary information in deoxyribonucleic acid (DNA) strands. One interesting application of DNA data embedding can be tracing pathways of genetic material in novel ways. This paper explores the decoding performance of several DNA data embedding algorithms proposed in the literature, which are also briefly reviewed. DNA may undergo random mutations, which can cause errors at the decoding stage of such algorithms. Although some proposed methods do account for such errors, decoding performance under mutations has not been previously studied in general. The empirical performance comparison that we provide here allows to fairly compare a number of DNA data embedding algorithms under mutations for the first time. The evaluation is undertaken by means of Monte Carlo simulations. Additionally, we propose two new DNA data embedding algorithms with good robustness properties. en
dc.description.sponsorship Science Foundation Ireland en
dc.format.extent 364903 bytes
dc.format.mimetype application/pdf
dc.language.iso en en
dc.rights Personal use of this material is permitted. Permission from IEEE must be obtained for all other uses, in any current or future media, including reprinting/republishing this material for advertising or promotional purposes, creating new collective works, for resale or redistribution to servers or lists, or reuse of any copyrighted component of this work in other works. en
dc.subject DNA data embedding en
dc.subject Decoding performance en
dc.subject DNA watermarking en
dc.subject.lcsh DNA en
dc.subject.lcsh Data encryption (Computer science) en
dc.subject.lcsh Digital watermarking en
dc.title Performance of DNA data embedding algorithms under substitution mutations en
dc.type Conference Publication en
dc.internal.availability Full text available en
dc.status Peer reviewed en
dc.neeo.contributor Haughton|David|aut| en
dc.neeo.contributor Balado|Félix|aut| en
dc.description.admin BIBM '10 not yet published; on publication, add bib. info - AV 17/01/2011 en


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