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- Browsing CASL Research Collection by Date published
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Browsing CASL Research Collection by Date published
Now showing items 1-20 of 77
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(BioMed Central, 2006-09-05)We describe Distill, a suite of servers for the prediction of protein structural features: secondary structure; relative solvent accessibility; contact density; backbone structural motifs; residue contact maps at 6, 8 and ...
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(Mary Ann Liebert, 2006-10-24)A significant step towards establishing the structure and function of a protein is the prediction of the local conformation of the polypeptide chain. In this article, we present systems for the prediction of three new ...
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(BioMed Central, 2007-06-14)Background : Structural properties of proteins such as secondary structure and solvent accessibility contribute to three-dimensional structure prediction, not only in the ab initio case but also when homology information ...
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(ACM, 2008)We are delighted to announce the release of GEVA an open source software implementation of Grammatical Evolution (GE) in Java. Grammatical Evolution in Java (GEVA) was developed at UCD’s Natural Computing Research & ...
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(Bentham Science Publishers, 2009-01)Genetic Programming is a form of Natural Computing which adopts principles from neo-Darwinian evolution to automatically solve problems. It is a model induction method in that both the structure and parameters of the ...
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(BioMed Central, 2009-01-30)Background: Prediction of protein structures from their sequences is still one of the open grand challenges of computational biology. Some approaches to protein structure prediction, especially ab initio ones, rely to some ...
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(BioMed Central, 2009-06-26)Background: Proteins, especially larger ones, are often composed of individual evolutionary units, domains, which have their own function and structural fold. Predicting domains is an important intermediate step in protein ...
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(Wiley InterScience, 2009-10)The prediction of 1D structural properties of proteins is an important step toward the prediction of protein structure and function, not only in the ab initio case but also when homology information to known structures is ...
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(Springer, 2010)Short, linear motifs (SLiMs) play a critical role in many biological processes. The SLiMSearch (Short, Linear Motif Search) webserver is a flexible tool that enables researchers to identify novel occurrences of pre- defined ...
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(Springer, 2010)In this paper we propose an evolutionary approach capable of successfully combining rules to play the popular video game, Ms. Pac- Man. In particular we focus our attention on the benefits of using Gram- matical Evolution ...
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(Springer, 2010)We present an analysis of the genotype-phenotype map in Grammatical Evolution (GE). The standard map adopted in GE is a depth-first expansion of the non-terminal symbols during the derivation sequence. Earlier studies have ...
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Improving the generalisation ability of genetic programming with semantic similarity based crossover (Springer, 2010)This paper examines the impact of semantic control on the ability of Genetic Programming (GP) to generalise via a semantic based crossover operator (Semantic Similarity based Crossover - SSC). The use of validation sets ...
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(MIT Press, 2010)Perhaps the biggest limitation of interactive EC is the fitness evaluation bottleneck, caused by slow user evaluation and leading to small populations and user fatigue. In this study these problems are addressed through ...
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(IEEE Press, 2010)Trade execution is concerned with the actual mechanics of buying or selling the desired amount of a financial instrument of interest. A practical problem in trade execution is how to trade a large order as efficiently as ...
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(Springer, 2010)Although there is a plentiful literature on the use of evolutionary methodologies for the trading of financial assets, little attention has been paid to potential use of these methods for efficient trade execution. Trade ...
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(Springer, 2010)Although there is a plentiful literature on the use of evolutionary methodologies for the trading of Financial assets, little attention has been paid to the issue of efficient trade execution. Trade execution is concerned ...
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(Elsevier, 2010-01)Grammatical evolution (GE) is a form of grammar-based genetic programming. A particular feature of GE is that it adopts a distinction between the genotype and phenotype similar to that which exists in nature by using a ...
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(Inderscience Enterprises, 2010-04-24)A new evolutionary design tool is presented, which uses shape grammars and a grammar-based form of evolutionary computation, grammatical evolution (GE). Shape grammars allow the user to specify possible forms, and GE allows ...
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(Springer, 2010-05-01)Grammar formalisms are one of the key representation structures in Computer Science. So it is not surprising that they have also become important as a method for formalizing constraints in Genetic Programming (GP). Practical ...
Now showing items 1-20 of 77